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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 379 165

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 26 15

Repositories

Showing 10 of 472 repositories
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk’s past year of commit activity
    Python 322 BSD-3-Clause 96 63 8 Updated Mar 29, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 29 9 279 15 Updated Mar 29, 2026
  • deep_ccf_registration Public

    Tissue slice registration to the CCF using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Mar 28, 2026
  • npc_sessions_cache Public

    Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.

    AllenInstitute/npc_sessions_cache’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Mar 27, 2026
  • npc_stim Public

    Tools for accessing and processing stim data, compatible with data in the cloud.

    AllenInstitute/npc_stim’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 27, 2026
  • npc_sessions Public

    Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.

    AllenInstitute/npc_sessions’s past year of commit activity
    Python 2 1 55 (3 issues need help) 0 Updated Mar 27, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 16 BSD-3-Clause 5 99 3 Updated Mar 27, 2026
  • scrattch Public

    Single cell RNA-seq analysis for transcriptomic type characterization

    AllenInstitute/scrattch’s past year of commit activity
    HTML 38 5 2 0 Updated Mar 27, 2026
  • npc_ephys Public

    Tools for accessing and processing raw ephys data, compatible with data in the cloud.

    AllenInstitute/npc_ephys’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Mar 27, 2026
  • npc_mvr Public

    Tools for reading raw video data from MindScope Neuropixels experiments, compatible with data in the cloud.

    AllenInstitute/npc_mvr’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 27, 2026
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