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@CompEpigen

Computational Cancer Biology and Epigenomics

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  1. methylbert methylbert Public

    A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution

    Jupyter Notebook 43 8

  2. PipelineOlympics PipelineOlympics Public

    R 2

  3. methrix methrix Public

    An R 📦 for fast and flexible DNA methylation analysis

    R 35 13

  4. figeno figeno Public

    Tool for plotting sequencing data along genomic coordinates.

    Python 337 15

  5. epiCHAOS epiCHAOS Public

    R 6

  6. pyjacker pyjacker Public

    Enhancer hijacking detection using WGS + RNA-seq

    Python 4 2

Repositories

Showing 10 of 54 repositories
  • CompEpigen.github.io Public

    CompEpigen IO

    CompEpigen/CompEpigen.github.io’s past year of commit activity
    CSS 0 0 0 0 Updated Mar 26, 2026
  • figeno Public

    Tool for plotting sequencing data along genomic coordinates.

    CompEpigen/figeno’s past year of commit activity
    Python 337 GPL-3.0 15 3 1 Updated Dec 12, 2025
  • wgbs_atlas_simulation Public

    Read-level methylome simulation for WGBS normal cell atlas data (https://doi.org/10.1038/s41586-022-05580-6)

    CompEpigen/wgbs_atlas_simulation’s past year of commit activity
    Python 3 MIT 2 0 0 Updated Dec 11, 2025
  • methrix Public

    An R 📦 for fast and flexible DNA methylation analysis

    CompEpigen/methrix’s past year of commit activity
    R 35 13 2 1 Updated Dec 9, 2025
  • wgbs_tools Public Forked from nloyfer/wgbs_tools

    tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

    CompEpigen/wgbs_tools’s past year of commit activity
    Python 0 53 0 0 Updated Dec 9, 2025
  • PipelineOlympics Public
    CompEpigen/PipelineOlympics’s past year of commit activity
    R 2 0 0 0 Updated Oct 14, 2025
  • epiCHAOS Public
    CompEpigen/epiCHAOS’s past year of commit activity
    R 6 0 2 0 Updated Oct 10, 2025
  • ChIPseq_workflows Public

    Workflows for processing of ChIP-seq, ChIPmentation, and Cut&Run data based on the Common Workflow Language

    CompEpigen/ChIPseq_workflows’s past year of commit activity
    Common Workflow Language 9 Apache-2.0 2 1 0 Updated Jun 30, 2025
  • pyjacker Public

    Enhancer hijacking detection using WGS + RNA-seq

    CompEpigen/pyjacker’s past year of commit activity
    Python 4 MIT 2 0 0 Updated Jun 29, 2025
  • ATACseq_workflows Public

    Workflows for processing of ATAC-seq Data based on the Common Workflow Language (CWL)

    CompEpigen/ATACseq_workflows’s past year of commit activity
    Common Workflow Language 4 Apache-2.0 0 1 0 Updated Jun 27, 2025
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