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LoqmanSamani/README.md

Loghman Samani

I am a computational biologist with an M.Sc. from the University of Stuttgart. Most of my work revolves around generative modeling for proteins. I am particularly interested in how energy-based and diffusion-based models can be used for structure prediction, de novo protein design, and conformational sampling, especially when they are built to respect the physics of biomolecular systems. More broadly, I care about developing methods that offer mechanistic insight into protein folding and conformational dynamics, rather than treating these as black-box prediction tasks.

I am currently looking for PhD or research positions in computational structural biology, machine learning for molecular science, or related areas. Feel free to reach out.

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  1. TorchDiff TorchDiff Public

    A PyTorch-based library for diffusion models

    Python 34 6

  2. CppNet CppNet Public

    A high-performance C++ deep learning library for building and training neural networks

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  3. smartsolve smartsolve Public

    A python machine learning library

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  4. biostoch biostoch Public

    A Python library for simulating biological and chemical systems using deterministic and stochastic methods, including Euler’s method, Runge-Kutta, SSA, Tau-Leaping, and CLE.

    Jupyter Notebook 5

  5. deep-learning deep-learning Public

    Deep learning models built from scratch, including MLPs, CNNs, RNNs, LSTMs, Transformers, and GPT-2, with implementations of optimization and regularization techniques.

    Jupyter Notebook 8

  6. physics_aware_diffusion physics_aware_diffusion Public

    Adaptive Fokker–Planck Regularization and Physics-Preserving Distillation for Efficient Energy-Based Diffusion Models

    Jupyter Notebook 6